Scaffold Ga0316219_1001364

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1001364
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26522
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F012318	Metagenome / Metatranscriptome	281	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y
F058637	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100136415	F058637	N/A	MGEIMSYDFDPVKYGVLWQKVEDYEKKFDSMERKIDKLENSIDKLVSLADKSRGGFWMGMAMVSGISGLVAFVAGFYHSK
Ga0316219_10013642	F012318	AGGAG	MAYNSAFAPFGATYQVGTSAVQVKAANNVYPSGYRIVNLTSSLVHVGWAPQEPNDATVTPVATAPSAGAPVMNVLAIPANGVGVFSSIPPNAWFIASAATSVEITPGEGIS
Ga0316219_100136421	F028086	GGA	MTNEGIPFGGNLKVPDNDCEETFFALYPDFFYEGSTALTLWTQGWQAALDHAEYKKPVIQLI
Ga0316219_100136425	F002539	AGGAGG	MNEHIWTAAGTDITIRWRMNGWTPPSEIQGYRDKWRYYQNLPLRQLDDAAKEQYEQVLRKAKVMRIK
Ga0316219_100136428	F017967	GGA	MAIKWYVKAPVSEYTAQDGTNKKRYATVGIVTETKKGDLMLKLEMFPLLGLKEGAFWAYLNVPEEKSEQAEKSSNSIEDDKIPF