Scaffold Ga0316219_1000876

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1000876
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36715
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F027087	Metagenome / Metatranscriptome	195	Y
F103136	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100087610	F017591	AGGA	MSTMIANADALVAYIEAFTGSSNDTEIKQCIFLAEMMMRNIELPGLRTNPYTTIGVANTYGQVPIPPDMNRPILFFYQGSGGGPNGAGPWIVYDRIGDRDIIEQSLDQQLYLNPINVPEVYHGSFSEVGQYYEFIPQLTAGAQINMYYYQTWPLLFSLESDGTTLVENNVVLQSFPEGYIYGTLHNYYQKRKMTDDANSWLAKFDLAWDTVEDQNNKGKWSGGHNKLTSIFQPRRNKRFSTR
Ga0316219_100087611	F010759	N/A	MITNTNYNEFENYQDKSYLDDQEPEYNEGAHRQDVGGLVTTDNGIADRLLKNNDLYRELKGDWTRTDWNKSRNVKVTTGREDGKFYIKREQLNVEYIAEVCADYRKRAEAGYVDPLAPLMPDGKIGYKWMELPDTIAIQISNDYFGGMSWHTIKLDKTLKAQFYRVVETEYPAFICYPGGKLPIPIDVPYPARVGQTAFFQGANFAPAVSK
Ga0316219_100087616	F103136	GGA	MLDLRNVVVSNLNGHTGIMGRFVKMKSLLDQKCAANLRLLATKNNINRLSDYHYLNLAVTDSTDPVNDLDYIHPVVKPVVDYATSVITKGMAQNGEINFEFVADNEDDEEAARQATNMVHKLINQNNDPHFILQHWVMDACLHKNGEMLVAPMRESFVRYITTQGTQEQLKAFEQQASEAGLSALRTSKRKKHVDLAQVLKETQQHAAGLTAQQHEENINKLLESSQAIAGGDLEATPDVENVQLRDTEDAIGDSINRNTVYEAKYKLTGYNLNIRFRPIAQHYWMCDPTVISIEEQPFCGFYKPMSIQEAYELYPDIDLEEFKVYAEYSNVGSYQAGSLLNNLAIHARDSVPINGLPAQGYSAQEPEARQVTVLTVWNRYDIDNDGELELVELIYSGQYVISAREVEFIPVANMVPKPLAQNFYGMAIAESVVPMQEYMTSGYRAELLTGLLQATPRIGVKPDRVDFEQIQDGDASIFILDSKFNPATDVYAMPIPQGNPTFLDNTLARMQQDQMAMVGMTSPQDVFNPEVMDPGNSGAKLNLALSPNQVIQDNTVKNCSEGLKDAIWLIWRTLIAHGDDYGVKKLAQQFHPEGKAEFLDYKAFDDMNFNERKTIHIDLALGMKSEENSLQRLQIIKQAQQGLAQEVAQGVQMGALTPGSFKKMRRTYEDMLYVLGVKEADVYLLTEDEVMEMVKQAKAQSANQQPNPKDAADIAQKQSVAQLNQVRAQEIAANTQGTSAKMQLDGFSLVGEHKARAF
Ga0316219_100087618	F027087	GGA	MTSEKILQDVKILQKVNRVHREAFVEKFPGQVEHCLRLVMERLQAGLDKRDGVDPSRPDTWRMSTVEIADLAEAANYLTQIRSSLS