Scaffold Ga0316219_1000807

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1000807
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38481
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030957	Metagenome	183	N
F032513	Metagenome	179	N
F042703	Metagenome / Metatranscriptome	157	N
F094792	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100080711	F030957	GAG	MNTSTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLNQWAGIAVSSTSPSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPCEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPSGLSVAYQYTAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ
Ga0316219_100080714	F094792	GGAG	MPPTGIQTFYYGKNLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWAASEGLATSPNFTAPDYNQSVTITGDVLYMVQNQFFQITNQFAADGLTPLYFYHNFGQSVSGATILNLDGSVVTPAPTVLFSGNWMYHDVPSTLPYQVRYVDSAGRVKISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRQGIYNDPNHLPDIVVFDSNQEIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVAVVPTVLTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRATSNPLQEIYHQVFNESGPIAGMTNDPNPPTWSGQTPASGTVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGTIAAIRYYDPEGNESV
Ga0316219_100080715	F032513	GAG	MAKPFYLIWQEGTTVLEGYDGANWIDGQLTFPIVFPGVTTTPLALSLSSSASVNLTFETLINVAFYLTGSDAPTVQGEWPYITDAYGNATASVTGGVEISFDNGLTWNRFSNTVGLESTSSTWLPLPQEAVGSVGTAGQIGAFGTAHMLVRYVIPPSVSLTKVLDVQLQVDCDVV
Ga0316219_10008076	F042703	GAG	MKPDTSTPNPVHLAIVSPCSSCQNQLTVSHDGMPACPRRVAQQNIQYMQSAGIDTTAVQHLALYGTEGAAQAGSGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNQLCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMTTDGSALPVLIDGFAQKVNFIFNHPRTPLNKDLCPAGT