NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1000754

Scaffold Ga0316219_1000754


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1000754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40289
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (87.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013058Metagenome / Metatranscriptome274Y
F015557Metagenome / Metatranscriptome253Y
F015706Metagenome / Metatranscriptome252Y
F048059Metagenome148N
F074307Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_100075413F048059GGGGGMQALDKRTLKKELKLFLADKDRGISIKNFCEIAGISERLFLLVVKEGKAPMTESSQRGLNRAYMHWKEGKIRVMKKHTNETYPDYRKEPAPPVIPMNKLVFTNGGFKVQSKPLNRHDYSNFDNILLTRG
Ga0316219_100075424F015706GAGGMNNPMIAYHKKNELRGWSEVCRYPADWEGWHEADRSMINHLLQTGEYVVTLGWNMYQIIKESK
Ga0316219_100075428F074307GAGGMKIDFGETHLEKIDRLSKPHKWFAWYPVEISAHDYRWLEYVERTGKPSAYCDGLWFWKYKAIPKTVGDVLKEGRE
Ga0316219_10007543F015557N/AMENVFVTNRSDTELTIGYDGVVYEFKRNETVEIPVAGAVQLFGYGLDDREHILVRHGWIKTHAELEESLKKLDQFVITTEKPGKNSSLPSAVGVVPLRIEKSVGGKSSERRVA
Ga0316219_100075465F013058AGGTGGMNQVITLLKTKSVQHALLIAVLSVLQGFVFELPLTPVEQMIAGIFLAVFIVLYKDEVSTT
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