Scaffold Ga0316219_1000496

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1000496
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53629
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (61.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021237	Metagenome / Metatranscriptome	219	Y
F028402	Metagenome / Metatranscriptome	191	Y
F032569	Metagenome	179	Y
F056283	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_1000496100	F056283	N/A	LVDEQLPKCYTMNIVNNLELKMFETIVDQLVKVTLTNESVKTEFCNGTLFVRTITEAQARKVFHRLSETLGLGKVQVSPIGDTGEYAFDFV
Ga0316219_100049622	F032569	GGA	MIRVNIKDDAFNRAYWNAKRTLPVARLETPRQYGQRWREAFKCRVDPDGSHGPGNITYIFDHDEDYTWFMLKWG
Ga0316219_100049650	F028402	AGGAG	MNTFNFDTLKEALNPAKFIDQAEKNTQAILAYVQPAELSKTLVSFTSDASDFVRAQLSAIESITAIVKTQAEDAVKSFTKAVK
Ga0316219_100049665	F021237	GAG	MFHYDYQWYLTKDKIVLDEELNTDKLGWKSGDLFKFVNVNGRQLLIKIDPLVKFLEDGAAKNEQGS