Scaffold Ga0316219_1000444

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1000444
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56720
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (84.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F015706	Metagenome / Metatranscriptome	252	Y
F037510	Metagenome	167	N
F079674	Metagenome	115	Y
F094498	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100044411	F037510	GGA	MIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWRGLNAQLCKDCAAPLYEAQEQTMKIIIANRDQDILIN
Ga0316219_100044413	F001629	GAGG	MNFNQGKLAEGLVDEVLQIIHNYDDTLYMATVIGCLELVKQQLINDAMEEDND
Ga0316219_100044423	F094498	N/A	MIEDREDAYEDLMKFLEEGESVEGIVFGEYGWGGYGEKENHKVQKKNQGKLMTLAEAEPLMHGWTFYGGYGAPECNAIYVWTNKRIIWVTQYDGSTTLDSAPRDPIDCIPDMPGG
Ga0316219_100044458	F015706	AGG	MNNPIIAYHKKSELRGWSEVCRDSIYWEGWHEFDRSMIEELLKSGEEVITCGWNMYQVIKEAK
Ga0316219_100044473	F079674	GGAGG	MDQNLDFLLREYKDRIDMLEQALARGNATSYEEYKYICGQLRGLEAACGIIIDLKQKVEHLDDE