Scaffold Ga0316219

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1000054 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031759 Open in IMG/M

Scaffold ID

Ga0316219_1000054 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	161846
Total Scaffold Genes	256 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	177 (69.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

161846

Total Scaffold Genes

256 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

177 (69.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.0411

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F006060	Metagenome / Metatranscriptome	382	Y
F030989	Metagenome / Metatranscriptome	183	Y
F034483	Metagenome	174	Y
F034813	Metagenome	173	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100005417	F034813	AGGA	MSYDSDYESVYMVEFESGRTIHVQFFDVEEVKEYCGDNYPNDTIKTIYKEVYCNFAEAE
Ga0316219_1000054178	F001774	AGGAG	MALQLNLPTTQFGQPAPEAYARVTNFFGSKDQLQVQVAIYYNEAARQANMATVKENAHYISTADLAGKGDLLPAIYAVLKTFSDYAGATDC
Ga0316219_100005424	F006060	N/A	MLVVFSGILYNGTLLIIKSFQSKTQKRGFMLKFTGVAKVGDIIRAYDFKPMAGRDDAFIEGIVIDANNMEGGYKAFKIEVTSDKFKKYETKAKKTNRVGALMYVPHETGFMEFDFRVVNLSKV
Ga0316219_1000054242	F030989	N/A	MKYIAKPKLFNNIGMKEFDDAREAVLYLNKVLSDNDVNPELDYVFIAPKASPKQLKHAIEEYTGIGKLICVA
Ga0316219_10000543	F083691	GGCGG	MGISAYKEVTEWSDVEFTVPQNVYLFDGKSNALAYAKESNGEIFIFKKPLAIDTRRRKFIKVKHEALDSYGATVVLDVPNLENTPHWSVKSDSGKTYTVTLESGRYTCNCIGFAYRNKCKHSEQIKEAQEK
Ga0316219_100005489	F034483	AGGA	MKIYVTGTANLGDFLNTMPVLSGLTKSYGKYSLILKGSTKKFKGIKEFLMYQDLFSDVEFDDDIIPYGDMIQLSSWPSRETKGDPDRPIETCRYENWLRDKYDLMFEVNDKFVVLTPEMDIEIKDAYYVGDRWAVGEIDNRRETHVLSYLKDCEFINFDNDMLTNAYIIKNLKKPFITNFTGVGMLADLCNVPLYCVWKAEDWKPEFRVGDNVSWDDGKDINKVFEKHFYLNRKAKLVHAKDLEALL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0316219_1000054

Overview

Ecosystem & Geography

Associated Families

Sequences