NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_11021050

Scaffold Ga0315907_11021050


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_11021050 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004006Metagenome / Metatranscriptome457Y
F013408Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_110210501F013408N/ALEEDEYTVVNFTPYVTKAGKTMSHIVLSNKDKELTRVIVFPTLYKFSLAKMREGMKCKPVLSKLDDGTLMVKEIK
Ga0315907_110210502F004006AGGAMEDVEGLITSISMNQILVALLEEHGKLTVPTLRFLDANVSNKELVIDYDEDNPSFTFSLRTVNKDEEESN

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