NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10716350

Scaffold Ga0315907_10716350


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10716350 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029089Metagenome / Metatranscriptome189N
F050316Metagenome145N
F098895Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_107163501F050316N/AMNHLVTIPKSDISKADIADIAAGLILRINEGEVNPIAAHVRLKAVVKALEQVLKETEQIVRDEAEKHGKTFSAFGAEIQIKEGALTPDYTHDQ
Ga0315907_107163502F098895N/AMTLLEKCNADVFKYILDIKQKDLVIGEKLIFILQKHESPFDLTCSEMLWFSANLPYEIWDIKVHTFPRLFESQQTTTMP
Ga0315907_107163503F029089N/AKHGAAPKPTNANLLDLNDRLGLVPAYDDLTAATLKADFLKLVKKLPADQQERYIKDIDQMTPARFEKGIAFIQNQLSKK
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