NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10674593

Scaffold Ga0315907_10674593


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10674593 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)790
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014593Metagenome / Metatranscriptome261Y
F026002Metagenome199N
F036229Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_106745931F014593N/AMDPKKDFKKFFQKMFDTPVEIQGEVLTPEELTRKNFIIFVDNYKKAILRSREAQEKFGLDFWSWEDLFAKSLEGLIYYTFDDEVAEVILWYIYEHSLAEDQEDKIVNFGDEAFVIE
Ga0315907_106745932F036229N/AMTLYCYYYVKNDPTQEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWSVAKKKVF
Ga0315907_106745933F026002N/AIKYEDPEELFELASKEEFVTFMFKNAIAAIKQAIRKNKSECVIYSIQNYNVTVAIKKEHYKTFLNKAIRHYEKLEDYAQCSELVTLKSRL
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