NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10511281

Scaffold Ga0315907_10511281


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10511281 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070098Metagenome / Metatranscriptome123Y
F084225Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_105112811F084225N/ASDDKLIVHSFMVPVVFDSIQEPGVRYLIADGKWTPIPNHLGYKHIVHFRKEFKGGKNEAFKNKFEQEVDGSKGKKYTVKCEDNIWSCTCPAFGFSGNSGCKHIKQIKDENGWN
Ga0315907_105112813F070098N/AMEIKDILSELIQVATNQLGERSNPENFDLEDFISTLEDYYSELDEIGEFYYLDDENEGYSFDE

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