Scaffold Ga0315907_10421970

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10421970
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1071
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F006467	Metagenome / Metatranscriptome	372	Y
F029724	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_104219702	F006467	AGG	VFRNIILDLVGGAWTILGLLFAVVVLPEGQTQSTMAALFTLLTILWLATGPLRWKE
Ga0315907_104219703	F004668	AGGTGG	MTTEDHRKELKEQGWTRIDTAPGEWVALVPSEDGSAFGGTLWKRADNGNDYSEGCTCGHPISAALDYQKAGLALAAHIKEEIGE
Ga0315907_104219704	F029724	GAG	MKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYAVDPTAGDGIKAKAAATGFVEKEGVSDNGSSLGDLIKTAKQMGAKARYAKSW