Scaffold Ga0315907_10328413

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315907_10328413

Scaffold Ga0315907_10328413

Overview

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10328413 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1249
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_103284131	F014609	GAG	MINELVGIIGLLITILVLVIKATAEIIKMKSQLFPNGGSSLSDKVTRLQLDVVKIRSTIDSINSQLGKKP
Ga0315907_103284132	F018353	AGG	MSKPKAKKQTIELPDVMASELVRIVNTAHEEGKLIVGFVACLELFDGKKKTIKIVANQDMPQHSVFGIINYAAEKYQFTMSPEEDDDDFYDPEWFDGQ
Ga0315907_103284134	F001805	N/A	TNKIMVGIDDQVIELTGADKEAFLADRKATADAKTLLEAEYKAKRDARESAITKLGEIAGLTKEELDAIL

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