Scaffold Ga0315907_10219632

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10219632
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F037191	Metagenome / Metatranscriptome	168	Y
F058114	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_102196323	F058114	N/A	MIEITFTREELRHLYDVLLRNHLQVKQSVIDKIDKEVIADEIYELLGDLECLDATLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK
Ga0315907_102196324	F000919	GGAGG	MRFRNIEFRWSKCNNKYELVKWYHNNCSGQENCYVIAFFDKDKECYNMRTVGDRFFEDKDAFVVAKYGLEFLNAIYYIEKEEEDEE
Ga0315907_102196325	F037191	AGGAGG	MTVAEMIEKLQQFPQDQEVQITDGFQYKFYKGNFEFQLFEDVDGSTFVDIGIGGYDYD