Scaffold Ga0315907_10183280

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10183280
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1761
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F014849	Metagenome / Metatranscriptome	259	Y
F018352	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_101832803	F003393	N/A	MMRNKMITLEKDDTIPIMDYYKVDVLTAGQLMVDDFILVDGDVVSIIDIVSLPDGYSLEIENDFGEREVIQVDEYDQFDLMMLQ
Ga0315907_101832805	F000808	AGGAG	MEYTYSLTTSYDGELIHTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0315907_101832806	F018352	AGGA	MGKFKNAIMEILAHGDCYGAGWQFVGNAINYDVWACECNPYNIPADEIQEYHQLFKTKEN
Ga0315907_101832807	F014849	N/A	VMLTNWDLLAIIIALLGCLTVMCLFWKQNIAQQKEIRRLRNELRKALKV