NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10170648

Scaffold Ga0315907_10170648


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10170648 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1835
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F007688Metagenome / Metatranscriptome346Y
F056605Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101706481F007688GGAGGMTANFKLDAMLELRKFLWDELKTRNIFDEDDYWSDNLNENIVPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQILFTIYSTDFS
Ga0315907_101706482F001900GGAMLMQASSGLERLMAGNRDGVLKDSTVAQISAYLYYNANVIAKLTSNKQFQSMFSETIFNQIQKDFGEYIDAKARTSPRSLHHVYEWKKVGNKSARLFELNLMSQDGLSFKISTAFKPSRSLVPLSGGTKRRHTFINKASVMEAGMPLKISPRNATRLVFESDGETVFMPKGASVTVKRPGGPGVKNQYFLAHSRFFTGQLVNQSIKNSGFQRIFNAGMAKALSLPSGIKKVQYKFSPNLVRSQADSALAASFGGVL
Ga0315907_101706484F056605N/AYGIRIDRSSIVDNTVYVANGMVPPSIYDVNGVFQTNVPYKVQGKFGWEKVPDEVELAGIELMKDYFAKDQVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII
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