Scaffold Ga0315907_10162623

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10162623
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1886
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_101626232	F003393	AGGAG	MIDLENDDTIQIVDYVKADILTAGQLMVDDCIQVADEVVSIIDIVSLPDGYTLEVVNDFGERDIIEVGEYDQFDLMILQ
Ga0315907_101626234	F000808	GGA	MDKEYTYALTTSYDGELIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDLTGKMYTKTFYTNGKVSIK
Ga0315907_101626237	F005348	AGG	MINSVMSFDCNDCNGQGLIFWGDNLDYNVEKCECENFALGTLFTTKEAD