NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10151720

Scaffold Ga0315907_10151720


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10151720 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1962
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F005504Metagenome / Metatranscriptome398Y
F007468Metagenome / Metatranscriptome350Y
F014250Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101517201F005504N/AWSPAVTILTKLSHLVPNSLLTLEYEEETGWGGEYEILRGEVKEIAEWENRCYACQSFNTLDYCEDDCGEFCSECNQGSWQDAEAMAKCQTHSVLLESREKADV
Ga0315907_101517202F000868AGGCGGMSFLEDENQMVIDAEYSYIGEQLVEEWVNSNLDEGQFYADYRFAEMCESNYLKGRFNQFYDLNKDDEYYIEWDEEA
Ga0315907_101517204F007468AGGAMESVYVIRSSKLIEYMKLHLISLNQDLDKDLNVESKINIQGQIMATEHLLSVVEDIMGA
Ga0315907_101517205F014250AGAAGMMYSDILDPRLQKLIDLGESGTDILHGELKNLMLEAETQLGLAQAQEDETEEAMDSMERTYWEGQLDALSHVYGLTYQLAFAITDRKNK
Ga0315907_101517208F000852AGGAMTTKREYLTSKGITVGRRGRFSGAAKVALQEAEKAGIKFSAEKPAK
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