NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10117532

Scaffold Ga0315907_10117532


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10117532 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2271
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054788Metagenome / Metatranscriptome139Y
F060847Metagenome / Metatranscriptome132Y
F077196Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101175321F077196GGCGGMAREKLVDQQPAMVGGLNDVSDDSALQPDQLRRATNLRLTDYGAATKRGGTQRTSTNALAAAAVLNGFTFQQDGGTNQILAVCNGVLRTTTYGTFPWTFATQSGALSTTVAPDFAQFRDTGGNDVVYIADGGLLNKWSGSALTVDIANTVAVDTLQVHNERLWACGNSSFPDSIFYSALNDGDTLGYGA
Ga0315907_101175322F054788GAGGMAVSRAELVTLTREAMDAVGSDRWSDSLIKSVLNVVYDDEWSNLLNASQYYTYGMRTVTTDANGVVAFTSLNNGAGDSQQNFYRILSVSDGNVLYGQTRFQDVPLATTTNYLPTYPRLYYIVGEQVQVLPVASGTTLYVAVNYKPTALSDLGSDASTINFPLGGEWIIANEAGARLLNKGGAESGAAQVLKREAAELRAGMLDDIRRRTINPTMLAYPDQKYDWAGG
Ga0315907_101175323F060847GGAGVPVLLNSAGQPEPPTHIVARLRALHAGLHLKYMDYTAQHWAVCMTWDTNDRRWERVQTGQTDPASAYDIIGYLPLACRMDEAPAYLERMLRQYPKDEVRNMADHVQQYNATAPVDAAIEEALTEALESPVLPKKRGRPKKLS
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