Scaffold Ga0315907_10037558

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10037558
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4328
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003393	Metagenome / Metatranscriptome	489	Y
F003965	Metagenome / Metatranscriptome	459	Y
F029439	Metagenome / Metatranscriptome	188	Y
F084151	Metagenome / Metatranscriptome	112	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1003755811	F093770	GGAG	MITLNHSINLVTEIDEHKMPNHLLNTFVNLSELQMEKLLRGAFIQALHDKKFLDEINAGNSWAVVKVAN
Ga0315907_100375582	F084151	AGGAG	MTITYSIWQGSNLLSINNIANNIKDVDKVIAELNTSDVAKRVKFSANIMKVEVTK
Ga0315907_1003755820	F003393	GAGG	MSDTIDVMDYVKVDILTAGQLEVDDLILVGDDVVSIVEIISLADGYTLEIINDFGEREIIEVGEYEQFDLMMLQ
Ga0315907_100375583	F029439	AGG	MITLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLEMLVSSQGVISHKYLSPNESRWVMSNMKESN
Ga0315907_100375584	F003965	AGGAG	MTQTIIQVCKTHVPNKSAISDVNDTQFTFCEVCEQNIERWYNDTDPERLPMWTSWKVGK