Scaffold Ga0315907_10033459

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10033459
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4620
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006303	Metagenome / Metatranscriptome	376	Y
F009333	Metagenome / Metatranscriptome	319	Y
F018718	Metagenome / Metatranscriptome	233	Y
F039625	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100334591	F018718	N/A	YLESYPTDELGVELNETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWIN
Ga0315907_1003345912	F039625	N/A	MNISELSSLSLSELRSLNEAVVNMIKLKRNMESTLKKVELSVGMRVRVNHPKLMGRELEIKKISRTKATLGVIGGFSSYNVPISMIEY
Ga0315907_100334598	F006303	N/A	MLNWIKEKLVPSYKLNNKETLILDVITNMCEQADTDILMAPLSGRYYLVNKRLEYWIRVFDDGVTITNHKFTFSNTSPQGFQHMVIKVVEAAIEKSRDEFETAVFQNEVELLENIVSNIKHKK
Ga0315907_100334599	F009333	GAG	MNIVRFNRHELFNEDWMSYHSETLRRVENFYIDRNESWFNEVYNQLCGVWDGYLYTEMLDSAREIGIPPQILQRIANTMRFIQSNQN