Scaffold Ga0315907_10033385

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10033385
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4626
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F017972	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100333851	F017972	GGAGG	VRTKHLQLVSQKHSVTTTTKFNVSSPFGPVNPASTTLLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALLATPTDEAGTDADVRRVW
Ga0315907_100333853	F001477	AGGAGG	MNNVYTIHPPKSDLILFYEVVTPDGENEWGGASAEHCMQWLTLAPNNSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREVGR
Ga0315907_100333854	F000821	AGGAGG	VNKEYLEAKFDLCINQAEKNIKEEEIAEAIKNLRRANSALSQLFGFEEDENE
Ga0315907_100333855	F003212	AGGAGG	MKDKYLVTIEIDTYDGDPKGWDWSYYFVSDEVKVISSEFKGRVLPEEEASE