Scaffold Ga0315907_10026977

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10026977
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5234
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F024955	Metagenome	203	Y
F038086	Metagenome	166	N
F048773	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002697711	F038086	AGGAG	MATTIITNISNTFNAENIQPTKTISNIKPFNSTISNAALGTVIAIATLANTIAISDLKPIPSNIQKVNYAKIITPTSILPFRLSLTNIGIEGYDPANPPGIGIQIIGFSNYIL
Ga0315907_100269772	F017131	AGGAGG	MAFPGSYNFNYYRGDTAEFVIRPKTANGSAFDLTGFNSDFFIATARGESGTQYEAQAVVDASADTVTCTILPGVGRDLSPGTYVYDVQIDSGASEIYTLLTGTITVTDDITGAL
Ga0315907_100269773	F010302	GGAG	VVDVLLNTEDVVVLGPPETIDVLVDIGPQGTRGSKFIVGSGEPNAQTSSGTLLGQTLILNDMYIDVSPGQDYGYLYQYVSQPGGNTWVQVLHMNPAIYSAVETISFSSGAGSITIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGSWSALTGNKTVHLFISIV
Ga0315907_100269774	F024955	GAGG	MAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYDFDTAETDPEELLNPSIAYTINDLQNQIDDNATLEEAARDISRASTTAPTAAAFTAFSAGIPNGYIWVDTDSSAGVGYYSATSVYTATAPTTNLANGLLWVDKGSSPLKMYVYNGDTSTWDEIGA
Ga0315907_100269775	F048773	AGG	VPTSFDSDGKAAYIYNEGNDTWYQVSGKTDISGTFEWTGLHTHLSTFTTAEHSIAQKGTNNFLNPSARDTAIPSPVAGTVCIIRQNAGGDTVNEIQVYIGGSWTTVLPSPVGQTEKFLKSNGTISVWEQSPDAMTQVILMMGA