Scaffold Ga0315907_10026221

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10026221
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5323
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F033041	Metagenome / Metatranscriptome	178	Y
F058996	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100262212	F011488	N/A	MTNDELIEELYHKAHAKGFFHELHDKVKELKQDGSARCEHRLVQKAYSELKKIKLARPSHQN
Ga0315907_100262214	F058996	AGCAG	LDWMDNPCIKKIKVMKKTNIITPMWKNCLAVLQTGDMELADTKLMELVWKLASYTMLGFKDIDKIEGVKLEVWKERVWYAIENNGLLPE
Ga0315907_100262216	F033041	N/A	MEKIKINPNFKFTFDTDVDLRRAELSGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERANEFDMVEIYQDTHMFDMYDYI