NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10025847

Scaffold Ga0315907_10025847


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10025847 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5365
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007798Metagenome / Metatranscriptome344Y
F019824Metagenome / Metatranscriptome227Y
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002584714F007798N/AMKDTTLKQLVRDRNGQPRGMVVATVIDGTIRLGWSHTNTKAGDRFDKRKAFTIALGRAENGWGPNKTVPVSTTKVLNKMVDRAVRYYKNVPVTL
Ga0315907_1002584715F019824N/AMDKYITDNFTGSIDDLLNHCSNLDADKVEEQVKAEEKQACIEVIMKELDCNEFEAEVIYNEISLAETKKTVDKMVEDGLLYVSGTNEDGEPLFSLTELGKALRDEMEKGK
Ga0315907_100258476F023346N/AMNKISKNIILTYAKGIRTIQSEQIDPYLKLIEAELIKVYPELKDREDNALNWAYDVMNAESNTEVVETLERLDKIIRNERASDWTCNYCGKNTFNDDIEYLFGTNHLGCVLTDDIKNRSHSDPDYNLNTELRKISDLENELRHTKRELQNMELKLHQLRQDYHHEPTN
Ga0315907_100258478F039627N/AMTASFYKTVYQRKFNEMPRWKKLAIVEDSERNHWSGLLTDFVKAVIEEAEKEYANSKKAETASPSGYPAESEIKSKKTIKKKS

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