Scaffold Ga0315907_10025847

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10025847
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5365
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007798	Metagenome / Metatranscriptome	344	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002584714	F007798	N/A	MKDTTLKQLVRDRNGQPRGMVVATVIDGTIRLGWSHTNTKAGDRFDKRKAFTIALGRAENGWGPNKTVPVSTTKVLNKMVDRAVRYYKNVPVTL
Ga0315907_1002584715	F019824	N/A	MDKYITDNFTGSIDDLLNHCSNLDADKVEEQVKAEEKQACIEVIMKELDCNEFEAEVIYNEISLAETKKTVDKMVEDGLLYVSGTNEDGEPLFSLTELGKALRDEMEKGK
Ga0315907_100258476	F023346	N/A	MNKISKNIILTYAKGIRTIQSEQIDPYLKLIEAELIKVYPELKDREDNALNWAYDVMNAESNTEVVETLERLDKIIRNERASDWTCNYCGKNTFNDDIEYLFGTNHLGCVLTDDIKNRSHSDPDYNLNTELRKISDLENELRHTKRELQNMELKLHQLRQDYHHEPTN
Ga0315907_100258478	F039627	N/A	MTASFYKTVYQRKFNEMPRWKKLAIVEDSERNHWSGLLTDFVKAVIEEAEKEYANSKKAETASPSGYPAESEIKSKKTIKKKS