Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10025356 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10025356 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5422
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5422

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100253563	F005054	N/A	MAEVLIRTQSPVTHQVFWNGDIATPDSTPIVKLYDITDDPAINPLINPTQLLETLTAVLDENNPGTYTVYVPYEYTDRNRTLRLQWEYTIEGTNVARTDEVFVVTPYVDFNHVQDLGFSTDSSDPNYRSYKDLVRAEKYARKQIEQYTGQSFFLYDDVFVLNGYDSDTLPLPAKIYELHELYANDILLLDTINEIDNWNYSVQISETGYGIKVNRANALDNTVYTANGMVPPTINDSSGIFQDNVSYKVQGRFGWERVPDDVELAAIELMKDYFSKDTTWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVQVI
Ga0315907_100253564	F001229	AGG	MYDLIDSVLSMKMDVYRQSDLQDPDTGAIVKQWNYYKTIDCHAKGIISNSATTRSSDKQIMSNKYSNEQVIQVRTLERVLFREKVTNVRNKDGLVIWSEINFPTETPTVFEVMGSTPITDPFGEVIAWNTTMKRSENQQIGL
Ga0315907_100253566	F000258	GGAGG	MTVNYKLDAMLELRKFLWGRLTTLNIFDDEDYYSDNLGESIIPILPVQQAPEMNQFLSGKKHIVYDKIGSSYEDNWMVCCEQILFTIYSTDISEINEIRNFMMDEFRRMDESARDINRWSGLSDKFKFYSIFIADISPTEPSEELQGFFSTDVILEVKYSRMVDSVGRFS
Ga0315907_100253568	F006841	AGGAGG	LATTVYDVEEITLQNGDKVKLKPLTIKALRKFMAAIAKTATSQTEDETLTILIEACAVAIESQLPELAADMDKLEGALDMPTINRILEVCGGIKLDDPNLGAAAVLAGQNSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10025356

Overview

Ecosystem & Geography

Associated Families

Sequences