Scaffold Ga0315907_10025035

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10025035
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5461
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F003267	Metagenome / Metatranscriptome	496	N
F004837	Metagenome / Metatranscriptome	421	Y
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002503510	F001345	N/A	MASAETVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPADK
Ga0315907_1002503512	F046907	N/A	MPWIRPQDQMPLQGYPVLITDNEGYQAVAWYDGSMWYSENHSWFTHEVLYYMPIPEIV
Ga0315907_100250352	F003267	N/A	MKLVHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKLVKDILDNSLVASKIRIVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMVFFNVVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF
Ga0315907_100250358	F004837	N/A	MTQDEYVLATKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAQANHHTVTHALNQSPQ