Scaffold Ga0315907_10024008

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10024008
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5592
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026257	Metagenome	198	Y
F048282	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100240081	F048282	N/A	DKRLKDYLDRAKRILNLSHWEIKISSDPPPDDAWADVEVSQNLYAATIRFSPGLWKEKPEEIRRVIAHELIHCHYAGVERLVEVVQDSLGTAAGEIVGKIWDVESERAADSLSTAVAELLPMPTFGDRS
Ga0315907_100240088	F026257	GGA	MTELAPVLTGCHVCRSPFVETINKKMRDGVPDMKISEWLSENAQYISRITLGKHKREHLTEPHERLRQQAVNVMKKQQKTIKATGDLAGLVRDYVHSAVEQGLMTPTLAEGLRAQEMIDRRQEKGADREIALTLAGILGGGTTYQVIEATEIKPISGGETEQ