Scaffold Ga0315907_10022579

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10022579
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5808
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F005092	Metagenome / Metatranscriptome	412	Y
F026861	Metagenome / Metatranscriptome	196	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100225791	F026861	N/A	MKLHEFQELIKAQRQAQQLTNLEKIATIIKTTEKENN
Ga0315907_1002257911	F000684	AGG	MTLGGYTYQVGDLFTTSKTGVTGRIEKFVPQTKNVTKVMLRLANNQTRFAMVKTI
Ga0315907_100225794	F005092	AGGA	MDKLEYALRQIANCNLCEGKGVFYFSSGDYYDFEDCECNTYGIIFDHDGEVIWDNGLLSEPELFLTQEAY
Ga0315907_100225796	F058095	GGAG	MQYDYVITTYYDGELKNTHRINDLFDAVEVWQMCKDFGDAKDYATYNFMDLTGKMYTKTFYRNGDVSIK