Scaffold Ga0315907_10021885

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10021885
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5914
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F078246	Metagenome	116	Y
F097207	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002188512	F097207	AGGAGG	MPDIQTALSNALNNQLKNTINDWEKDDMQTTQNNTQSKSTRFFDITNNVTRATFEYVKHHPNQTSPEICISMERLGYKSSSVGSLLAQFAKQGLAERDDRGRYITIVPEYRPLKAKKKTLKIVPKPVEAPPKRKYEKKAVTGIGALLREKLENAPMTSQDALDAAAYAMGHTPKRMISLVRSKTPDDILKDMTVFQARELYDYLKKMFGG
Ga0315907_100218856	F002653	GGA	MSYVHGDYSMTEEELERRVEAMSDEEQHHFRLLIHKIVMCYGTGKAQGVFIIGRAEDNVAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0315907_100218859	F078246	AGGAG	MPRPKPPEPLLGRQVRMSDRHWMILQQLGGAEWLRTILDKKAPMPKKYYDRELERIRNPDDAIFLQRRQGEIND