Scaffold Ga0315907_10021049

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10021049
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6049
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F017452	Metagenome	240	Y
F058807	Metagenome	134	Y
F074881	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002104914	F058807	AGGAGG	MNVELVKEHENGDATYVFELTNDEAKALLSFGILEAIKAGIRRGEKITVEGADLEDFSHPGLSD
Ga0315907_100210494	F017452	GGA	MIHTDEDDEFARIERENAMKGQPYHFEIYVSPSQRNEVLEEVAKEFDKMKAFGTTAESFAVFVRGMKK
Ga0315907_100210498	F074881	AGGAG	MVFNLEPNEAAFIVRVVGQLPTESGAFPLHQKLVEQFQAQDKQQEVAPVTAE
Ga0315907_100210499	F005320	AGGA	MSIDSIKPVKVAGELYWSNWMKEYNKKFNEANDKYECTLGQLSDAACAKLEELGIKLKDKDTMGKYIVGKSKFLFEPVDEEGNPVDISKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKLVITELKVYSPEGSPEEQETADDVL