Scaffold Ga0315907_10020353

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10020353
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6172
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F042296	Metagenome / Metatranscriptome	158	Y
F078623	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100203531	F009135	N/A	MSNPKYYLTVNLPPNFDEVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED
Ga0315907_1002035311	F078623	N/A	MKDTIIIHNIHDKASREFVAAYGNRNDVTVLEDDGLKVRLAFPYISAFPTVVIPTPSYETTDENGVVTKIEGSIEYLRAPEDWNKVQERIDYWENKVPNWKQTDSRYQA
Ga0315907_100203533	F042296	N/A	MNLFKSIIKWCGVIVYAAFLATVAYAATLPEPIKVYLIVSSRGGEYTIEKIYLKKENAEKYRDMFKDSHNYSVEERELTE
Ga0315907_100203534	F007859	GAG	MKKLIIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMIETSTNNVYTTHTNYYRAYYNCDGKIIKTTPNK
Ga0315907_100203535	F010081	N/A	MQEQIDTIIKDYTEKMRGVDNNKSIPMVVKELDGIVYSMYRELYGLRDIRHNNYYLNSFVADDKKGHCC