Scaffold Ga0315907_10017491

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10017491
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6737
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001749112	F043895	N/A	MIGLSILATETTLVALQQDFDAKLRAISQIESNDNDKAKGRHGELSRYQLKRAVWKQHFPSEKDQRHIPSAARRCAKAHLCWLELRLCVAQRVNNPQPRDVYAAWNIGLEAFSRRDYNFDRLPDSIKQRADRFTNLYTEFRNSQ
Ga0315907_1001749114	F093769	N/A	MSNSNLNELDLLLGLPKPVEEMTDKELERFLIKHFPHTRPTGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK
Ga0315907_100174915	F012771	N/A	MNSKIKRPTSKVFVVSDDTHKKLKAYAMKMGYKLQYIADEAVAEYLARKESK
Ga0315907_100174918	F037195	N/A	MNIFNPTNPPQHNPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIDVLKGQIDPDDMPLVDELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPFVFNEDIFREQLLEFINTGEIGSQASWQNYTSSAEKYARQLALQDNTLIIETTPNELIIMKMSEEMLKGLE