Scaffold Ga0315907_10016938

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10016938
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6864
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F017469	Metagenome / Metatranscriptome	240	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F067515	Metagenome	125	Y
F069714	Metagenome	123	N
F082173	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001693810	F017469	AGAAGG	MNICQFCGWQVPQPDWYNYLDQKPVCNNCLMDNATEREKERAN
Ga0315907_1001693811	F069714	GGAG	MNINIKESYMPEYTKAITFECEGEEYLAEVYIGKNCSDYNLYQGNKKLEDKPAWLEKAELDPEFNFLFFIDDLAWEYEESKKVVSV
Ga0315907_1001693812	F006842	AGGAGG	MKAQSVYCGDHLTLITECGCLDYLKEITSSAERLVQLTQEREKMK
Ga0315907_1001693814	F006618	AGG	MSKIKQHLEEQIVISHSSEESTGWKRYIAFNYQGNQYELTLYWEEFNGYDTYWRSPDKTPAWVVEWDSEAHSGMSFEHYLDDLTWESEK
Ga0315907_1001693821	F082173	GGA	MAKQFKTTTLLAEEGGKVWVEAQLSEAQVKRIIKAYERAGVSLTAYGSPNQVLAQVRELEGAF
Ga0315907_1001693822	F067515	N/A	MKSYYTNETLKSTANRILKEFEGGGASWEGVALEIARLELSLKEFKKLGLDIDKGIDLGTWDGSYCASEKDITLFDPKCCDHDYESSCECCLGDCDDCQDEQNIQLI
Ga0315907_100169384	F022400	AGG	MRRVVIESSQRSTLRLVGTGEGESGSALSPFGPVRAGLITTQRTNKEVQLMELLNSLERKITEANTKSCEVLNIFLHGTTHLVEPIVSSSGKTITD
Ga0315907_100169385	F018703	AGG	MSKQVENRIETAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMATDEQVGKRWLDITGRTRSAKHRS
Ga0315907_100169387	F011756	GGAGG	VSEPAYLFGDDYAYNGGYEELIDCNICNKMFDRVEYRSDTCSDCEDEIIKREREGKRV