Scaffold Ga0315907_10013066

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10013066
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8064
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F028501	Metagenome / Metatranscriptome	191	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100130663	F095133	GAGG	MMTNTAAAAGSSGRPYPHYLDRVDVLLDDTWWSIWVDFEPADASVGLPATAWLVHAHVAEHYADIADYLSESTIKRLETEAADYLSGGD
Ga0315907_100130664	F012570	GGAGG	MQTIIVDGTTYKVKFDRDPIELAKAARKPYRPKKPKDIRKFPFWTESVSTAEYIHRFDVLNFLQPVQYAGASAKTAAQYDPTIPLCEVFNDD
Ga0315907_100130668	F028501	N/A	MMKTITARYDGFCAATGARILPGDVIQWERGRSVLLERKAARIDTITLVGEHGPRDYYRNARGRCIDAPCCGCCTI