Scaffold Ga0315907_10012471

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10012471
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8290
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F013524	Metagenome / Metatranscriptome	270	Y
F024047	Metagenome / Metatranscriptome	207	N
F041152	Metagenome / Metatranscriptome	160	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100124711	F042296	N/A	MNLFKSVIKWMIIGLFACFAYAATLPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCEQFK
Ga0315907_1001247112	F006018	N/A	MKKYTIKINDIGMCMSVKCDFYQTCTNNSVNMFYKTKHKFEPVLDGNVCLSYDSGKNSKEYPDNCYPNLVKKIYVN
Ga0315907_1001247114	F041152	GAG	MNIVNYIVNNWDNLPKSKFDDVIVVIFKMIQNWDEGYGHHTYEGYGVDKDGNVTWCYSSGCSCSGTPQTEIKKDLKTFIVDDGIDLNVDPSTIDFNSLEVEFNSY
Ga0315907_100124712	F013524	N/A	MKTNNEVIVRLREFTNNNCNTTLDPKLCEDIRYLCDEVERYSREVVKANNFMDEDHITIQRYKKKLENCQNKLSNYEPF
Ga0315907_100124714	F024047	N/A	LDGKLNMNIVNKNEVVDWLKNVVEKKMVKELNVPNAKVYLSCDRPNPDVILETKNDEGDLQIVRFLII