Scaffold Ga0315907_10012459

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10012459
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8291
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011756	Metagenome / Metatranscriptome	287	Y
F017469	Metagenome / Metatranscriptome	240	Y
F018703	Metagenome	233	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100124593	F018703	GGAG	MGTVERRTEVAKAQAVRKRNYRRARDRALARLSRDYPNVYRTYLEEEMNSDEDMGKKWLDIAGNTKSSRFRRR
Ga0315907_100124595	F011756	AGGAG	MSEPRYLFGDDYAYNGGYEELINCDTCAVEFDRAEYKSDTCVNCENERVKREMANK
Ga0315907_100124596	F017469	AGGAG	MKSICKFCGWEIANPDWYNNYDGGYACDNCLMDQATEREKENSI
Ga0315907_100124597	F006618	GGAG	MSKMKQHLESEIVIKGSSHEDTAWKRYIRFEYEGNSYELTLFWDEFNGYEIYWQVPNKTPDWVVNWNQDEYGGMSFQWYLDDLTWEGK
Ga0315907_100124598	F094887	AGGAGG	MASKELKEINEALTNLWWSAEISDNAKLWWNDHYQQLMERELAK