Scaffold Ga0315907_10011907

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10011907
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8531
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036147	Metagenome / Metatranscriptome	170	Y
F044373	Metagenome / Metatranscriptome	154	Y
F081291	Metagenome / Metatranscriptome	114	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001190710	F044373	AGGAGG	MLRDGYFIKEAPPKIGAHYTPQFYQKPATPEERFVQDVMLGITPYRESPVTKLLGRLLRI
Ga0315907_1001190711	F097262	AGGCGG	MKCMTCNERTYVVNVIKMAGGLRRQRKCKSCGAGAYSAEVWLRATANGAEPVYTKEEAALIKKKAVNARRANEDRRKDDAS
Ga0315907_1001190713	F081291	GGAGG	VRRIDYWKAKLPAARAEERARQRELNQMERAFQRAVDEVARIETRIEDEKAKLARTK
Ga0315907_100119075	F036147	N/A	MATQKKNSGSPGKSGVGFGSNFRSSLGGGTPLADDKKRDNEDIPWSLLITVMAVLLTFFIVMPIIGYMILDVHFATQAAVHEVKKMRQLRKEILEERLYGK