Scaffold Ga0315907_10011892

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10011892
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8536
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001189214	F006543	GGAG	MQKFSFNVDVVADALDREVVTEAIRECLADTLPGDVHASVKAGEVKAFSEQGYKVWRARVTGVTADAAGDSANPKKSKRETAEATA
Ga0315907_1001189215	F053106	GGAG	MGKFYIKSGTLEVTLSKRDALEAAISGLLLTNKFDTIDEYFYVDERGYRDYVSADPQTNVIATKSIVRAAGWELSRGDEE
Ga0315907_1001189217	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSTCEFLGNGCYAEQTEKMYPNVRPAGMQNVITERGRIRSMILDAIRQGKSIRWHERGDWFLNGELDTDYVDNVVWACESILADGATLPDMWFYTHIYDPRLSMMDKYMAVYASVHNANDKATASLAGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVIIDGEKFVTCPEIRRGRGVVTCTPTKGSVDCNLCVRGLANVLFPSH