Scaffold Ga0315907_10011567

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10011567
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8680
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003267	Metagenome / Metatranscriptome	496	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100115672	F020667	N/A	MSVTLIAYPTTSFINDLAAWNNFNTRADADGADTKEDACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGFRYSSTFFNSSLFNKLVMPYAAGTMPINLSGSNILAQSTGNTNIFLLTNYTLNFPKDTPAPFYDNPGYWVASSSTFVAPATDTRWNVDINFTLSGSFVSPGGQHRFVCSMSVRNLTAGTDNAVIGNFDVVNNQATKITFENITIPANTTANIGFRVEDIRSGVTQPYTLLSGATVQWTCLENPSNIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQNLTNGDPNAYTNIIFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKALQTGYRLAQYNLIEGQTEWAYQYGVSGNTALSVGILKMPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTDFAATTTTPIASDPEFLFNGPIDPDPVDPGYEPPINPELPSEG
Ga0315907_100115673	F021095	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNFRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRIGSSFNSVRPLTTPTAFTVYQGGSNFLAINGTKYTTVSANDTWLVSARVNYKSVNYDFAVSPSLSGTTDFNIQRFACGPANLSGTISALSGAVEGDSYTVQFLGNAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0315907_100115676	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGLFGYFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0315907_100115679	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEVLDEIRVGIVGPPDQRKVVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANADCVGAYWLTKEEFPQIADHNNPEGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF