Scaffold Ga0315907_10011195

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10011195
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8860
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F036096	Metagenome	170	Y
F053068	Metagenome	141	Y
F073090	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001119512	F073090	GAG	MNLNYNSMMYWYGTAMEIDSLYQLEKLKTHYYSKITGIQASSYETLKTIYENKQAIEKAIAQEKEMQIKDLKKRNRKLIVHNTVLSIGLSALAISTVYFVIL
Ga0315907_100111953	F009003	N/A	MKAKEKAWQLYSNYFDIIENGKQEGQLAEVHIKAINCALQCVDEAISNAPSDIMQDFEGTGEYYSVKAYYHHVKNEILKLNGKAPKELDDRAAKG
Ga0315907_100111955	F053068	N/A	MTQEKKETAIRRLHLTLKRRFKGQAIRMTWAEMEGLLNAVQIIEMNHIQNAYNDGYLDGESGLPNRTQIEA
Ga0315907_100111958	F036096	N/A	MKATLTFDLREDQHAFDCAVNGMKYFDMIYEIQQHLRSLEKYQDLTGEQYELVGKIREWLASELLDAGIADKF