Basic Information | |
---|---|
Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10010900 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8996 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000557 | Metagenome / Metatranscriptome | 1026 | N |
F008996 | Metagenome | 324 | N |
F021095 | Metagenome | 220 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315907_100109001 | F008996 | N/A | DTNDPQAAQELAHFPVTFHAHTAMGHPWELTSKHRNRIAEVYRHFDWVAYFEDDMMLPKEGFVNFTKQFDSMFEDNLYPSFTRIETYPNVEGEFSPDITFNPTPNMWREWNGKTYASLPFYINYHAFWMFSTKRLAEVLSRNPQALQIIPNNGLYRESLASLPIWSLELKPMLEMTEQGELADHCKVYHLSNNYQDNSRNIKEIFKR |
Ga0315907_100109003 | F000557 | N/A | MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGYFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ |
Ga0315907_100109006 | F021095 | N/A | MSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPTLTQTGFADHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLDTYFRFGNTFTLVRPLTTPTAFTVYQGGSNFLAINGTKYVAAGFDSWLASARVAYNGVNYDFAVSPSLSGTTDYNIQRFACGPANLLGSIPALSGAVEGDSYTVRFVSNASSQSPPTTFTFGPCERFNSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL |
⦗Top⦘ |