NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10010502

Scaffold Ga0315907_10010502


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10010502 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9209
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F003582Metagenome / Metatranscriptome478Y
F042904Metagenome / Metatranscriptome157Y
F105019Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001050215F042904GGTGGMSNQQTVLEGIIEDVATDLYNKWVKALPEDEKNDVAFQAMSKNAQETTLFVIQEFMNKFNSAAAELKDQ
Ga0315907_1001050220F000671GAGGMDKILCYCCNKTKNKLNAKKSALLPINLLMCETCINAKFEPRWVVILAGRQNGMEHVKDFVVKHRYVGSEITASELII
Ga0315907_1001050222F000473GAGGMFIDKSADREKEHFKYGINQWTGEPNKPVFYTDEMKKRVREIKKPVSNLMMDVVMYPEFLTLRLYEDNFIQYVGIQKEMVIDYVSRVKKLIESYGVRCELEGVPSERVL
Ga0315907_1001050226F003582N/AMHTYGIKIEINAEVEAFSEDDAVDYVNDMFGVDDEVKSVKVVSVKEK
Ga0315907_100105025F001176AGGALTNGTGMDTPPNNTPSGAVTSQEAGRKNPSQGKFRSGINNQRSLTRIDTNKHGIRRETSMQPKKTKPKKV
Ga0315907_100105028F105019AGAAGMAKHHDKIAKSLEIRRANWKNPAGKAPGSMNKKKTGYNRQKANGAK
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