Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10009416 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10009416 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9864
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9864

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y
F042315	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000941610	F034162	N/A	VRWVDASFRLPVTQNMPVEVELAGGGTEKRDTVTGDWRQVIRWRTILDADLKSKKKKG
Ga0315907_1000941613	F022193	N/A	MTDTHDSHIKDYYEYHSEQSAFFDHLAEVNKPVDAGLDEAAALNWCESMHELTGTWSADVWSEKGWW
Ga0315907_1000941614	F028156	GGTGG	MVANKEFRPVGGDELLARAKLCAKLLEVIDEVTQASELIKDGRYWDAYRVTNKIELMASEVSLDLHGIDIALGEEGKL
Ga0315907_1000941620	F023838	GAG	MPTSPLLLALWLLVSASATCLPVTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFQAIQRMERDGIRPSVWLLALRWNCGYEGMRRRMREPWSYAEHVHNLYYDHDFR
Ga0315907_1000941621	F020891	N/A	MTFAEHAFAACCHKAKQVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKAAPKVVEEGWLEELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMADRPIQYSGAGKTSFAPAQPQGPAEPAGWRDWVRENSADPSHADKPWSALDASAQRYIIAKLNEPPAVHPARPSPSPVLDREEVSDEDVPMARQADAGALLVGSLLQSYRKAF
Ga0315907_100094165	F042315	AGGTGG	LKKQKRYPRNWNLEHRPSNKWQQVLVARKDKNDRQAKRNAKSLPDLSPTELYEAIDEGYHYFWNKRGRIPPNYNAIRWAKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10009416

Overview

Ecosystem & Geography

Associated Families

Sequences