NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10007578

Scaffold Ga0315907_10007578


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10007578 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11294
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F020651Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000757813F020651AGGMKVAILLLTQNRHDLTQRVINQNFFNSGYNADCFLIDNGSDTHETYNYPFTGYDLSKEKRGIAAGVNAGLRMTENYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEDLPPIVDGVHKTHTPFGDNFITRDLIDKVGGYNTEYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTEYRRMKDESLARAQSVWDKYQDIYHNQNNIRCEYSA
Ga0315907_100075785F011074N/AMQLVGINNPGEVKLAILEDWIRTEYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDRLFNPLSVFTKLNSSGIKVWTKEDGALAKNKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKQNKTTFK
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