Scaffold Ga0315907_10007328

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10007328
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11517
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018327	Metagenome	235	Y
F096711	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000732812	F096711	AGG	MSEEIQIPEFPEYTGFELLDIISNQLEVIATLAELSDSEYKTYDEEIDDINTVKRNTYRIVFAAQRKLLKHVKDYEPKKDQP
Ga0315907_1000732819	F018327	N/A	MGYIKVLPQAGLTSEQRAEAISYELWAISRPPAIRNPNDVTTYLFGWVKHPTQDPAYQEIVDTALDVELDYNIIVHPENNLTNLIALFPELSQAEKDALAGFIESQQSFQFQYIIPQGTTVFTYEQMKDSGWFPEPNFGGLV