Scaffold Ga0315907_10006852

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10006852
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11982
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F025232	Metagenome / Metatranscriptome	202	Y
F074586	Metagenome	119	Y
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000685211	F095365	N/A	MEKYIQAAYEFYRQDVTTNYLSYEDFKKQLGAACPPCNCKKTPWWLLLAGGAAVGYALKK
Ga0315907_1000685212	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVTQKVLTKSAETKDASGTVIPGTYLVGSGKTGKLIADAAPIVVGLLLQGQSNLFAKEAGKGMIAQAAGALIKTNVVPGLGLGAVDSMDYSAGTMMSGLDTGVDNPMISAVPSDSSYVAPSIGAAYYDDGSEAAY
Ga0315907_1000685216	F021092	N/A	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQTFEVSITGKEFDPPKQDSEPITGFGVNPSYPSAGGIIGVEQYLSKHEENATLREKIKGLELEIQYLRDQHNREIERLRSDHELALKAAKDSNQMFSQGLGMLMQRMGVGE
Ga0315907_100068522	F025232	N/A	MENVNEKILEDYRIVVMRLDLMKAEVDEVNRANWKLRMAFNELLEVYQDTLDRIDSIKDRGEVEYYWCEKAGILD
Ga0315907_1000685226	F074586	N/A	MTQFTWLVTTLWTETIAGEQNYVVIASYDVKGIDGTYTASLSNTAQFSTANVSNFIPYDQLTNEIVVGWIQQDLGVNGVANFE
Ga0315907_100068528	F019993	N/A	LLFPNFVEMNKEVKLLLVAGVGYLGFKAYQIYTALKQLSYAPTGINFSIIKERGAIGGTLFVDIINPTAATIKVDGFTGTVTTTNGTLIGDYKGTALVLKPGSNNVRISWGSRATTTLIPLALGIFKGNWPVLKFNTVMNVKGFPIPTSFTLNTKDYKPTLV