Scaffold Ga0315907_10006826

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10006826
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12002
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (51.61%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F009134	Metagenome	322	Y
F012771	Metagenome / Metatranscriptome	277	Y
F028148	Metagenome	192	Y
F086598	Metagenome / Metatranscriptome	110	N
F097203	Metagenome	104	Y
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000682613	F086598	N/A	METDKIVQLTDNLLRLAAMVKRVSESVDRIEKTLKQHDRKIQQALEQSSQSERNSDDSEWEGFGPKPEQQAFNPNAETYTVELGHGPYTIRRADGEDDKTWAGRKKHLLNQRVGFLNSSGASGTPEQEAYLKETYDRLAAHGR
Ga0315907_1000682616	F001964	GGAG	MSRNLFAPPKFKVQISGAIGWSDLKERVVSFRTVEFRTRKEAEQAARDLNPGEYTQGRLRVVPVEMPEDYDVYPIPEWSKANP
Ga0315907_1000682617	F002227	N/A	MKLTIQSKTNAQTIIDLFNAIVTGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIVQQGEPETL
Ga0315907_1000682621	F102590	GGAG	MKTQFTPGPWRTTGLNVRAGDALICYAMNHHANAETPEHEKMANARLISLAPQMLLALQRLTHPMADDEDLDYAREVIAKAKGLQ
Ga0315907_1000682623	F103133	N/A	MRYKIQLSTSTGGWSDLRASYDGENYEPCLFPTRKAAIAAREEFGELSEFLETLRIVPAETPETENIYA
Ga0315907_1000682624	F028148	N/A	MKTIHQIIREIQFFDPAVRAFDAHDLPQSVRAYLHHNYRMDARLTEEEQQLVEISFEPFADNLREAFQDDPRPDATRFYLFDDGSLYVRTNAGPELWADAQVFVVERILPNMRLTRLEADLMREIGMDEQVSEVRDDFFSAFAHILHRDCGIPHCDARNHWNAFSRQLGDSACESIVLGGSESGRAEGLRFASEYAVNA
Ga0315907_1000682630	F097203	N/A	MNYPETIPAAYQSADLERAYRMGWNHGHGIACHNVPTIGDRICPSIDWVGLGKLVTADNIAEYHECLCHAAESGSREYSPFEFVAHEFNESEDSESLWEAFESGVADSIRFDLKSYSYAELV
Ga0315907_1000682631	F009134	GAGG	MRNTISSKENVSLESLSALVRSKLAADAASTLERIDSYELEGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRTSVEVNVSEPQDK
Ga0315907_100068266	F012771	N/A	MTPTKPKRPTPKIFVVSDDTHKRLKDYAQRKGYKLQFVADEAVSEYLKRKEQQ
Ga0315907_100068268	F003748	N/A	MFQVNRKDAGGRYIDAEGEYTVTLTKVEENLDPKGREVCKVTFTTGEGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELVITVRSEEYEYNGEKKKTLRLKGMKAVAPVAAETEEKPF