Scaffold Ga0315907_10006421

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10006421
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12471
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F003267	Metagenome / Metatranscriptome	496	N
F004837	Metagenome / Metatranscriptome	421	Y
F009126	Metagenome / Metatranscriptome	322	N
F012449	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000642110	F004837	N/A	MTQDEYLLAEKHRHYWNQYQADLFMRLSPEAVHDLQTILVANGRPDTNWWCADCVKSALSYIYEQADLFAQANQQTVTHALTNTETPRAEG
Ga0315907_1000642115	F003267	N/A	MKLVHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKLVKDILDNSLVAAKIKVVVTRTNAWEQATLTEMYRASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCVYELKEVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF
Ga0315907_1000642119	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGWFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSRHLTKGMQAP
Ga0315907_1000642122	F009126	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPATNFGFFDVQRVVETLVAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGSTPAVTGATTTVSGVMAFAGNLEQLELADWSGGLYFPSGTFEDLITRSLATNVRRTVYSDSYGWLAQGVGSGFT
Ga0315907_100064218	F001345	N/A	MQSADQVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQEQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELNPDAPISQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLKTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQAHGHADISPAD
Ga0315907_100064219	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQVWYKTWLGRHKPFSCVTCLTFWVAVLLTWSTCGWFLAPIYGLASAGLTVVILQLTNR