NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10005205

Scaffold Ga0315907_10005205


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10005205 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14256
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F011374Metagenome / Metatranscriptome291Y
F021243Metagenome219Y
F036230Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100052052F036230GAGGMTQDLKVGDIVQVTPDKEMFGACMVVVTELKSFGIQGYVQSAGIPGQQYIRLKFDEYEPTGGKAVWVVGEQA
Ga0315907_1000520521F000220N/AMPQENPNQNDTLSKVLAYVDSPFKLIAILIMGVVAFSGYFVWQNQDLLVGAYRENQKMPSIAEDRIEDAASHLFKHTGAVVVAVFKVNPMFGTRVLHRAYTREGRDKINDGLDVGLFTSNSSNNRDVVALMAGEITCGSYTQAQSEIGLWYIEKGMNFGCRVGVPPDPSRFIGQITVGWAEQPEDMEKIHNLLLIAATMLTRSKQ
Ga0315907_1000520523F011374N/AVDPLTAFALCKGAYEGIKGCVAVYQDLKKTGHDLSNITTEVGGSLSKFFKGHAELEASHEKAEVQREDNQKKGIKDDLATQAIDNVMYLRQTKQFYADLEKMVRWEMGMPDLWREIVEEYQKLLDQKSEQAAMELHQKRVKAWRRQRLKNQILNRVLETVAVVFVIGYLICLMWMINLNHRGLLDTFLF
Ga0315907_100052054F021243AGGAMEPEDEAFEELALKQGQWHHESGWRKKQIAHMDMHSHPAEFVHLHRNDTLEEVAREIEQFAGPFGRDTVQSFAALVRGMKR
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